@itk-wasm/transform-io NPM

@itk-wasm/transform-io

Input and output for scientific and medical coordinate transform file formats.

Installation

npm install @itk-wasm/transform-io

Usage

Browser interface

Import:

import {
  hdf5ReadTransform,
  hdf5WriteTransform,
  matReadTransform,
  matWriteTransform,
  mncReadTransform,
  mncWriteTransform,
  txtReadTransform,
  txtWriteTransform,
  wasmReadTransform,
  wasmWriteTransform,
  wasmZstdReadTransform,
  wasmZstdWriteTransform,
  setPipelinesBaseUrl,
  getPipelinesBaseUrl,
} from "@itk-wasm/transform-io"

hdf5ReadTransform

Read an transform file format and convert it to the ITK-Wasm transform file format

async function hdf5ReadTransform(
  serializedTransform: File | BinaryFile,
  options: Hdf5ReadTransformOptions = {}
) : Promise<Hdf5ReadTransformResult>

Parameter	Type	Description
`serializedTransform`	*File	BinaryFile*	Input transform serialized in the file format

Hdf5ReadTransformOptions interface:

Property	Type	Description
`floatParameters`	boolean	Use float for the parameter value type. The default is double.
`webWorker`	null or Worker or boolean	WebWorker for computation. Set to null to create a new worker. Or, pass an existing worker. Or, set to `false` to run in the current thread / worker.
`noCopy`	boolean	When SharedArrayBuffer's are not available, do not copy inputs.

Hdf5ReadTransformResult interface:

Property	Type	Description
`couldRead`	JsonCompatible	Whether the input could be read. If false, the output transform is not valid.
`transform`	Transform	Output transform
`webWorker`	Worker	WebWorker used for computation.

hdf5WriteTransform

Write an ITK-Wasm transform file format converted to a transform file format

async function hdf5WriteTransform(
  transform: Transform,
  serializedTransform: string,
  options: Hdf5WriteTransformOptions = {}
) : Promise<Hdf5WriteTransformResult>

Parameter	Type	Description
`transform`	Transform	Input transform
`serializedTransform`	string	Output transform serialized in the file format.

Hdf5WriteTransformOptions interface:

Property	Type	Description
`floatParameters`	boolean	Use float for the parameter value type. The default is double.
`useCompression`	boolean	Use compression in the written file
`webWorker`	null or Worker or boolean	WebWorker for computation. Set to null to create a new worker. Or, pass an existing worker. Or, set to `false` to run in the current thread / worker.
`noCopy`	boolean	When SharedArrayBuffer's are not available, do not copy inputs.

Hdf5WriteTransformResult interface:

Property	Type	Description
`couldWrite`	JsonCompatible	Whether the input could be written. If false, the output transform is not valid.
`serializedTransform`	BinaryFile	Output transform serialized in the file format.
`webWorker`	Worker	WebWorker used for computation.

matReadTransform

Read an transform file format and convert it to the ITK-Wasm transform file format

async function matReadTransform(
  serializedTransform: File | BinaryFile,
  options: MatReadTransformOptions = {}
) : Promise<MatReadTransformResult>

Parameter	Type	Description
`serializedTransform`	*File	BinaryFile*	Input transform serialized in the file format

MatReadTransformOptions interface:

Property	Type	Description
`floatParameters`	boolean	Use float for the parameter value type. The default is double.
`webWorker`	null or Worker or boolean	WebWorker for computation. Set to null to create a new worker. Or, pass an existing worker. Or, set to `false` to run in the current thread / worker.
`noCopy`	boolean	When SharedArrayBuffer's are not available, do not copy inputs.

MatReadTransformResult interface:

Property	Type	Description
`couldRead`	JsonCompatible	Whether the input could be read. If false, the output transform is not valid.
`transform`	Transform	Output transform
`webWorker`	Worker	WebWorker used for computation.

matWriteTransform

Write an ITK-Wasm transform file format converted to a transform file format

async function matWriteTransform(
  transform: Transform,
  serializedTransform: string,
  options: MatWriteTransformOptions = {}
) : Promise<MatWriteTransformResult>

Parameter	Type	Description
`transform`	Transform	Input transform
`serializedTransform`	string	Output transform serialized in the file format.

MatWriteTransformOptions interface:

Property	Type	Description
`floatParameters`	boolean	Use float for the parameter value type. The default is double.
`useCompression`	boolean	Use compression in the written file
`webWorker`	null or Worker or boolean	WebWorker for computation. Set to null to create a new worker. Or, pass an existing worker. Or, set to `false` to run in the current thread / worker.
`noCopy`	boolean	When SharedArrayBuffer's are not available, do not copy inputs.

MatWriteTransformResult interface:

Property	Type	Description
`couldWrite`	JsonCompatible	Whether the input could be written. If false, the output transform is not valid.
`serializedTransform`	BinaryFile	Output transform serialized in the file format.
`webWorker`	Worker	WebWorker used for computation.

mncReadTransform

Read an transform file format and convert it to the ITK-Wasm transform file format

async function mncReadTransform(
  serializedTransform: File | BinaryFile,
  options: MncReadTransformOptions = {}
) : Promise<MncReadTransformResult>

Parameter	Type	Description
`serializedTransform`	*File	BinaryFile*	Input transform serialized in the file format

MncReadTransformOptions interface:

Property	Type	Description
`floatParameters`	boolean	Use float for the parameter value type. The default is double.
`webWorker`	null or Worker or boolean	WebWorker for computation. Set to null to create a new worker. Or, pass an existing worker. Or, set to `false` to run in the current thread / worker.
`noCopy`	boolean	When SharedArrayBuffer's are not available, do not copy inputs.

MncReadTransformResult interface:

Property	Type	Description
`couldRead`	JsonCompatible	Whether the input could be read. If false, the output transform is not valid.
`transform`	Transform	Output transform
`webWorker`	Worker	WebWorker used for computation.

mncWriteTransform

Write an ITK-Wasm transform file format converted to a transform file format

async function mncWriteTransform(
  transform: Transform,
  serializedTransform: string,
  options: MncWriteTransformOptions = {}
) : Promise<MncWriteTransformResult>

Parameter	Type	Description
`transform`	Transform	Input transform
`serializedTransform`	string	Output transform serialized in the file format.

MncWriteTransformOptions interface:

Property	Type	Description
`floatParameters`	boolean	Use float for the parameter value type. The default is double.
`useCompression`	boolean	Use compression in the written file
`webWorker`	null or Worker or boolean	WebWorker for computation. Set to null to create a new worker. Or, pass an existing worker. Or, set to `false` to run in the current thread / worker.
`noCopy`	boolean	When SharedArrayBuffer's are not available, do not copy inputs.

MncWriteTransformResult interface:

Property	Type	Description
`couldWrite`	JsonCompatible	Whether the input could be written. If false, the output transform is not valid.
`serializedTransform`	BinaryFile	Output transform serialized in the file format.
`webWorker`	Worker	WebWorker used for computation.

txtReadTransform

Read an transform file format and convert it to the ITK-Wasm transform file format

async function txtReadTransform(
  serializedTransform: File | BinaryFile,
  options: TxtReadTransformOptions = {}
) : Promise<TxtReadTransformResult>

Parameter	Type	Description
`serializedTransform`	*File	BinaryFile*	Input transform serialized in the file format

TxtReadTransformOptions interface:

Property	Type	Description
`floatParameters`	boolean	Use float for the parameter value type. The default is double.
`webWorker`	null or Worker or boolean	WebWorker for computation. Set to null to create a new worker. Or, pass an existing worker. Or, set to `false` to run in the current thread / worker.
`noCopy`	boolean	When SharedArrayBuffer's are not available, do not copy inputs.

TxtReadTransformResult interface:

Property	Type	Description
`couldRead`	JsonCompatible	Whether the input could be read. If false, the output transform is not valid.
`transform`	Transform	Output transform
`webWorker`	Worker	WebWorker used for computation.

txtWriteTransform

Write an ITK-Wasm transform file format converted to a transform file format

async function txtWriteTransform(
  transform: Transform,
  serializedTransform: string,
  options: TxtWriteTransformOptions = {}
) : Promise<TxtWriteTransformResult>

Parameter	Type	Description
`transform`	Transform	Input transform
`serializedTransform`	string	Output transform serialized in the file format.

TxtWriteTransformOptions interface:

Property	Type	Description
`floatParameters`	boolean	Use float for the parameter value type. The default is double.
`useCompression`	boolean	Use compression in the written file
`webWorker`	null or Worker or boolean	WebWorker for computation. Set to null to create a new worker. Or, pass an existing worker. Or, set to `false` to run in the current thread / worker.
`noCopy`	boolean	When SharedArrayBuffer's are not available, do not copy inputs.

TxtWriteTransformResult interface:

Property	Type	Description
`couldWrite`	JsonCompatible	Whether the input could be written. If false, the output transform is not valid.
`serializedTransform`	BinaryFile	Output transform serialized in the file format.
`webWorker`	Worker	WebWorker used for computation.

wasmReadTransform

Read an transform file format and convert it to the ITK-Wasm transform file format

async function wasmReadTransform(
  serializedTransform: File | BinaryFile,
  options: WasmReadTransformOptions = {}
) : Promise<WasmReadTransformResult>

Parameter	Type	Description
`serializedTransform`	*File	BinaryFile*	Input transform serialized in the file format

WasmReadTransformOptions interface:

Property	Type	Description
`floatParameters`	boolean	Use float for the parameter value type. The default is double.
`webWorker`	null or Worker or boolean	WebWorker for computation. Set to null to create a new worker. Or, pass an existing worker. Or, set to `false` to run in the current thread / worker.
`noCopy`	boolean	When SharedArrayBuffer's are not available, do not copy inputs.

WasmReadTransformResult interface:

Property	Type	Description
`couldRead`	JsonCompatible	Whether the input could be read. If false, the output transform is not valid.
`transform`	Transform	Output transform
`webWorker`	Worker	WebWorker used for computation.

wasmWriteTransform

Write an ITK-Wasm transform file format converted to a transform file format

async function wasmWriteTransform(
  transform: Transform,
  serializedTransform: string,
  options: WasmWriteTransformOptions = {}
) : Promise<WasmWriteTransformResult>

Parameter	Type	Description
`transform`	Transform	Input transform
`serializedTransform`	string	Output transform serialized in the file format.

WasmWriteTransformOptions interface:

Property	Type	Description
`floatParameters`	boolean	Use float for the parameter value type. The default is double.
`useCompression`	boolean	Use compression in the written file
`webWorker`	null or Worker or boolean	WebWorker for computation. Set to null to create a new worker. Or, pass an existing worker. Or, set to `false` to run in the current thread / worker.
`noCopy`	boolean	When SharedArrayBuffer's are not available, do not copy inputs.

WasmWriteTransformResult interface:

Property	Type	Description
`couldWrite`	JsonCompatible	Whether the input could be written. If false, the output transform is not valid.
`serializedTransform`	BinaryFile	Output transform serialized in the file format.
`webWorker`	Worker	WebWorker used for computation.

wasmZstdReadTransform

Read an transform file format and convert it to the ITK-Wasm transform file format

async function wasmZstdReadTransform(
  serializedTransform: File | BinaryFile,
  options: WasmZstdReadTransformOptions = {}
) : Promise<WasmZstdReadTransformResult>

Parameter	Type	Description
`serializedTransform`	*File	BinaryFile*	Input transform serialized in the file format

WasmZstdReadTransformOptions interface:

Property	Type	Description
`floatParameters`	boolean	Use float for the parameter value type. The default is double.
`webWorker`	null or Worker or boolean	WebWorker for computation. Set to null to create a new worker. Or, pass an existing worker. Or, set to `false` to run in the current thread / worker.
`noCopy`	boolean	When SharedArrayBuffer's are not available, do not copy inputs.

WasmZstdReadTransformResult interface:

Property	Type	Description
`couldRead`	JsonCompatible	Whether the input could be read. If false, the output transform is not valid.
`transform`	Transform	Output transform
`webWorker`	Worker	WebWorker used for computation.

wasmZstdWriteTransform

Write an ITK-Wasm transform file format converted to a transform file format

async function wasmZstdWriteTransform(
  transform: Transform,
  serializedTransform: string,
  options: WasmZstdWriteTransformOptions = {}
) : Promise<WasmZstdWriteTransformResult>

Parameter	Type	Description
`transform`	Transform	Input transform
`serializedTransform`	string	Output transform serialized in the file format.

WasmZstdWriteTransformOptions interface:

Property	Type	Description
`floatParameters`	boolean	Use float for the parameter value type. The default is double.
`useCompression`	boolean	Use compression in the written file
`webWorker`	null or Worker or boolean	WebWorker for computation. Set to null to create a new worker. Or, pass an existing worker. Or, set to `false` to run in the current thread / worker.
`noCopy`	boolean	When SharedArrayBuffer's are not available, do not copy inputs.

WasmZstdWriteTransformResult interface:

Property	Type	Description
`couldWrite`	JsonCompatible	Whether the input could be written. If false, the output transform is not valid.
`serializedTransform`	BinaryFile	Output transform serialized in the file format.
`webWorker`	Worker	WebWorker used for computation.

setPipelinesBaseUrl

Set base URL for WebAssembly assets when vendored.

function setPipelinesBaseUrl(
  baseUrl: string | URL
) : void

getPipelinesBaseUrl

Get base URL for WebAssembly assets when vendored.

function getPipelinesBaseUrl() : string | URL

Node interface

Import:

import {
  hdf5ReadTransformNode,
  hdf5WriteTransformNode,
  matReadTransformNode,
  matWriteTransformNode,
  mncReadTransformNode,
  mncWriteTransformNode,
  txtReadTransformNode,
  txtWriteTransformNode,
  wasmReadTransformNode,
  wasmWriteTransformNode,
  wasmZstdReadTransformNode,
  wasmZstdWriteTransformNode,
} from "@itk-wasm/transform-io"

hdf5ReadTransformNode

Read an transform file format and convert it to the ITK-Wasm transform file format

async function hdf5ReadTransformNode(
  serializedTransform: string,
  options: Hdf5ReadTransformNodeOptions = {}
) : Promise<Hdf5ReadTransformNodeResult>

Parameter	Type	Description
`serializedTransform`	string	Input transform serialized in the file format

Hdf5ReadTransformNodeOptions interface:

Property	Type	Description
`floatParameters`	boolean	Use float for the parameter value type. The default is double.

Hdf5ReadTransformNodeResult interface:

Property	Type	Description
`couldRead`	JsonCompatible	Whether the input could be read. If false, the output transform is not valid.
`transform`	Transform	Output transform

hdf5WriteTransformNode

Write an ITK-Wasm transform file format converted to a transform file format

async function hdf5WriteTransformNode(
  transform: Transform,
  serializedTransform: string,
  options: Hdf5WriteTransformNodeOptions = {}
) : Promise<Hdf5WriteTransformNodeResult>

Parameter	Type	Description
`transform`	Transform	Input transform
`serializedTransform`	string	Output transform serialized in the file format.

Hdf5WriteTransformNodeOptions interface:

Property	Type	Description
`floatParameters`	boolean	Use float for the parameter value type. The default is double.
`useCompression`	boolean	Use compression in the written file

Hdf5WriteTransformNodeResult interface:

Property	Type	Description
`couldWrite`	JsonCompatible	Whether the input could be written. If false, the output transform is not valid.
`serializedTransform`	BinaryFile	Output transform serialized in the file format.

matReadTransformNode

Read an transform file format and convert it to the ITK-Wasm transform file format

async function matReadTransformNode(
  serializedTransform: string,
  options: MatReadTransformNodeOptions = {}
) : Promise<MatReadTransformNodeResult>

Parameter	Type	Description
`serializedTransform`	string	Input transform serialized in the file format

MatReadTransformNodeOptions interface:

Property	Type	Description
`floatParameters`	boolean	Use float for the parameter value type. The default is double.

MatReadTransformNodeResult interface:

Property	Type	Description
`couldRead`	JsonCompatible	Whether the input could be read. If false, the output transform is not valid.
`transform`	Transform	Output transform

matWriteTransformNode

Write an ITK-Wasm transform file format converted to a transform file format

async function matWriteTransformNode(
  transform: Transform,
  serializedTransform: string,
  options: MatWriteTransformNodeOptions = {}
) : Promise<MatWriteTransformNodeResult>

Parameter	Type	Description
`transform`	Transform	Input transform
`serializedTransform`	string	Output transform serialized in the file format.

MatWriteTransformNodeOptions interface:

Property	Type	Description
`floatParameters`	boolean	Use float for the parameter value type. The default is double.
`useCompression`	boolean	Use compression in the written file

MatWriteTransformNodeResult interface:

Property	Type	Description
`couldWrite`	JsonCompatible	Whether the input could be written. If false, the output transform is not valid.
`serializedTransform`	BinaryFile	Output transform serialized in the file format.

mncReadTransformNode

Read an transform file format and convert it to the ITK-Wasm transform file format

async function mncReadTransformNode(
  serializedTransform: string,
  options: MncReadTransformNodeOptions = {}
) : Promise<MncReadTransformNodeResult>

Parameter	Type	Description
`serializedTransform`	string	Input transform serialized in the file format

MncReadTransformNodeOptions interface:

Property	Type	Description
`floatParameters`	boolean	Use float for the parameter value type. The default is double.

MncReadTransformNodeResult interface:

Property	Type	Description
`couldRead`	JsonCompatible	Whether the input could be read. If false, the output transform is not valid.
`transform`	Transform	Output transform

mncWriteTransformNode

Write an ITK-Wasm transform file format converted to a transform file format

async function mncWriteTransformNode(
  transform: Transform,
  serializedTransform: string,
  options: MncWriteTransformNodeOptions = {}
) : Promise<MncWriteTransformNodeResult>

Parameter	Type	Description
`transform`	Transform	Input transform
`serializedTransform`	string	Output transform serialized in the file format.

MncWriteTransformNodeOptions interface:

Property	Type	Description
`floatParameters`	boolean	Use float for the parameter value type. The default is double.
`useCompression`	boolean	Use compression in the written file

MncWriteTransformNodeResult interface:

Property	Type	Description
`couldWrite`	JsonCompatible	Whether the input could be written. If false, the output transform is not valid.
`serializedTransform`	BinaryFile	Output transform serialized in the file format.

txtReadTransformNode

Read an transform file format and convert it to the ITK-Wasm transform file format

async function txtReadTransformNode(
  serializedTransform: string,
  options: TxtReadTransformNodeOptions = {}
) : Promise<TxtReadTransformNodeResult>

Parameter	Type	Description
`serializedTransform`	string	Input transform serialized in the file format

TxtReadTransformNodeOptions interface:

Property	Type	Description
`floatParameters`	boolean	Use float for the parameter value type. The default is double.

TxtReadTransformNodeResult interface:

Property	Type	Description
`couldRead`	JsonCompatible	Whether the input could be read. If false, the output transform is not valid.
`transform`	Transform	Output transform

txtWriteTransformNode

Write an ITK-Wasm transform file format converted to a transform file format

async function txtWriteTransformNode(
  transform: Transform,
  serializedTransform: string,
  options: TxtWriteTransformNodeOptions = {}
) : Promise<TxtWriteTransformNodeResult>

Parameter	Type	Description
`transform`	Transform	Input transform
`serializedTransform`	string	Output transform serialized in the file format.

TxtWriteTransformNodeOptions interface:

Property	Type	Description
`floatParameters`	boolean	Use float for the parameter value type. The default is double.
`useCompression`	boolean	Use compression in the written file

TxtWriteTransformNodeResult interface:

Property	Type	Description
`couldWrite`	JsonCompatible	Whether the input could be written. If false, the output transform is not valid.
`serializedTransform`	BinaryFile	Output transform serialized in the file format.

wasmReadTransformNode

Read an transform file format and convert it to the ITK-Wasm transform file format

async function wasmReadTransformNode(
  serializedTransform: string,
  options: WasmReadTransformNodeOptions = {}
) : Promise<WasmReadTransformNodeResult>

Parameter	Type	Description
`serializedTransform`	string	Input transform serialized in the file format

WasmReadTransformNodeOptions interface:

Property	Type	Description
`floatParameters`	boolean	Use float for the parameter value type. The default is double.

WasmReadTransformNodeResult interface:

Property	Type	Description
`couldRead`	JsonCompatible	Whether the input could be read. If false, the output transform is not valid.
`transform`	Transform	Output transform

wasmWriteTransformNode

Write an ITK-Wasm transform file format converted to a transform file format

async function wasmWriteTransformNode(
  transform: Transform,
  serializedTransform: string,
  options: WasmWriteTransformNodeOptions = {}
) : Promise<WasmWriteTransformNodeResult>

Parameter	Type	Description
`transform`	Transform	Input transform
`serializedTransform`	string	Output transform serialized in the file format.

WasmWriteTransformNodeOptions interface:

Property	Type	Description
`floatParameters`	boolean	Use float for the parameter value type. The default is double.
`useCompression`	boolean	Use compression in the written file

WasmWriteTransformNodeResult interface:

Property	Type	Description
`couldWrite`	JsonCompatible	Whether the input could be written. If false, the output transform is not valid.
`serializedTransform`	BinaryFile	Output transform serialized in the file format.

wasmZstdReadTransformNode

Read an transform file format and convert it to the ITK-Wasm transform file format

async function wasmZstdReadTransformNode(
  serializedTransform: string,
  options: WasmZstdReadTransformNodeOptions = {}
) : Promise<WasmZstdReadTransformNodeResult>

Parameter	Type	Description
`serializedTransform`	string	Input transform serialized in the file format

WasmZstdReadTransformNodeOptions interface:

Property	Type	Description
`floatParameters`	boolean	Use float for the parameter value type. The default is double.

WasmZstdReadTransformNodeResult interface:

Property	Type	Description
`couldRead`	JsonCompatible	Whether the input could be read. If false, the output transform is not valid.
`transform`	Transform	Output transform

wasmZstdWriteTransformNode

Write an ITK-Wasm transform file format converted to a transform file format

async function wasmZstdWriteTransformNode(
  transform: Transform,
  serializedTransform: string,
  options: WasmZstdWriteTransformNodeOptions = {}
) : Promise<WasmZstdWriteTransformNodeResult>

Parameter	Type	Description
`transform`	Transform	Input transform
`serializedTransform`	string	Output transform serialized in the file format.

WasmZstdWriteTransformNodeOptions interface:

Property	Type	Description
`floatParameters`	boolean	Use float for the parameter value type. The default is double.
`useCompression`	boolean	Use compression in the written file

WasmZstdWriteTransformNodeResult interface:

Property	Type	Description
`couldWrite`	JsonCompatible	Whether the input could be written. If false, the output transform is not valid.
`serializedTransform`	BinaryFile	Output transform serialized in the file format.

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