motif-broker-2 v1.0.1

motif-broker-2

Front-end service to dispatch and aggregate motif requests on the list of couchDB databases, using couchdb-dispatcher.

Running the service

Options

• -f, --filename <endpointsJsonFile>
• -d, --database <couchDBdatabaseURL>
• -p, --port <couchDBdatabasePort>
• -l, --listen <listenPortOfMotifBroker>

# For example
node build/index.json -f endpoints.json -d http://localhost -p 5984 -l 3282

Querying the service

curl --header "Content-Type: application/json" --request POST --data '{"keys": [ "AAAAAAAAAATTTCAATTATAGG", "AAAAAAAATTATGTTCTTGACGG","AAAAAAACGGACATCCTTTATGG", "AAAACTTCATGCAAGTTTTGCGG","AAAACGGGTTGAATAGTCTCTGG","AAAACGACAATTGCCGTTTTCGG", "AAAAAAAAAAAAAAAATCAATGG", "ATTAAAAAAAAAAGCAGGATGGG"] }' MOTIF-BROKER-2_ENDPOINT/bulk_request

will return data only for query keys found in databases

{
    "request": {
        "AAAAAAAAAAAAAAAATCAATGG": {
            "Buchnera aphidicola BCc GCF_000090965.1": {
                "NC_008513.1": [
                    "-(203304,203326)"
                ]
            }
        },
        "ATTAAAAAAAAAAGCAGGATGGG": {
            "Wigglesworthia glossinidia endosymbiont of Glossina morsitans morsitans (Yale colony) GCF_000247565.1": {
                "NC_016893.1": [
                    "-(252902,252924)"
                ]
            }
        }
    }
}