1.2.0 • Published 5 years ago
sequence-analyses v1.2.0
Description
Extract sequences from input file or from standard input. Sends them to external services, HMMer web server, and InterProScan. Retrieve the results and store them into a JSON file
Installation and usage
Global installation:
npm install -g sequence-analyses
Usage without installation:
npx sequence-analyses
Usage after global installation:
sequence-analyses
Options
flag | alias | description | choices | default |
---|---|---|---|---|
-i | --input | Input file or string | string | stdin |
-t | --type | Type of input | pdb | pdb |
Email address (required by InterProScan) | string | |||
-o | --output | Output file | string | stdout |
--force-output | Force overwriting the output file if it already exists | boolean | false | |
-s | --silent | Don't output anything to stderr (no spinner) | boolean | false |
--version | Show version number | |||
--help | Show help |