Sequence-analyses NPM

Description

Extract sequences from input file or from standard input. Sends them to external services, HMMer web server, and InterProScan. Retrieve the results and store them into a JSON file

Installation and usage

Global installation:

npm install -g sequence-analyses

Usage without installation:

npx sequence-analyses

Usage after global installation:

sequence-analyses

Options

flag	alias	description	choices	default
-i	--input	Input file or string	string	`stdin`
-t	--type	Type of input	`pdb`	`pdb`
	--email	Email address (required by InterProScan)	string
-o	--output	Output file	string	`stdout`
	--force-output	Force overwriting the output file if it already exists	boolean	`false`
-s	--silent	Don't output anything to stderr (no spinner)	boolean	`false`
	--version	Show version number
	--help	Show help

sequence protein chain ebi interpro interproscan hmmer hmmscan domain family bioinformatics irb pdb fasta

node-fetch ora timing-functions update-notifier yargs

@infinitebrahmanuniverse/nolb-seq @everything-registry/sub-chunk-2734

6 years ago

6 years ago

6 years ago

6 years ago

6 years ago