1.0.4 • Published 3 years ago
sim-generator v1.0.4
SIM_GENERATOR
A little command line utility to generate pattern images for structured illumination microscopy
Installation
Head over to the release page and download the latest executable pattern_gen.exe.
Usage
Minimum usage
From the directory that pattern_gen.exe is in
pattern_gen <image_height> <image_width> <pattern_bar_width> --phase_shifts <n_shifts>Example with all arguments
pattern_gen 256 256 16 --phase_shifts 3 --output_directory D:\SIM_GENERATOR\DemoPatterns --orientation horizontal --file_format jpg --bits 8 --full_depth TrueWill generate the following images
|phi_01.jpg |phi_02.jpg |phi_03.jpg|
|--- |---|---|
|
|
|
|
| Argument | Type | Optional? | Default | Options | Desc | Example |
|---|---|---|---|---|---|---|
| Positional Args | (int int int) | False | NONE | NONE | Image Height, Image Width, & Bar width | 1024 986 32 |
| phase shifts | int | False | NONE | 0<n<inf | How many phase shift images | --phase_shifts 5 |
| output directory | str | True | ~exe location\patterns | where to save pattern images | --output_directory C:\Users\Thanos\Stuff | |
| orientation | str | True | vertical | vertical or horizontal | which way should the bars be oriented | --orientation vertical |
| file format | str | True | bmp | bmp tiff tif jpg jpeg png | File type | --file_format tif |
| bits | int | True | 8 | 8 16 32 | Bit depth of image | --bits 16 |
| full depth | bool | True | True | True False | If true Use full range of bitdepth e.g 255 for 8 otherwise image will be 0 or 1. When bits==32 option overides toFalse | --full_depth True |
| bar type | str | True | solid | solid triangle sine | Type of waveform | --bar_type sine |
Requests
If you have a feauture request open an issue and let me know.