Fastq Packages

.fasta and .fastq parsers

A simple fastq stream parser

Tools for working with FASTA/FASTQ files (Bioinformatics).

These two tools allow the counting of alignment flags (https://broadinstitute.github.io/picard/explain-flags.html) in a SAM formated file and the extraction of reads for selected flags.

Used for reading fasta and fastq files and structuring as valid javascript objects. The package provides also some useful utility functions like complementarify used for getting complementary sequence, or sanitizeGenome for sanitizing user input.

Streamable FASTQ parser

Package developed at A&A Biotechnology for reading all kinds of biotechnology related files

fastq wrapper persisted queue on disk to save some memory