Bioinformatics Packages

Module to read, manipulate and write phylogenetic trees. Written in TypeScript

JS library for visualising and comparing phylogenetic trees

Pulchra secondary structure extraction tool port to WASM

JavaScript APIs for Cell Atlas Approximations

Client and server functions to access genotype data from VCF via a custom web API and BrAPI

read feature and sequence data and produce highlighted fasta

Client-side search for gene set selections

DSSP port to WASM

The `epiviz.gl` project is meant to visualize genomic data using webgl and webworkers, in an effort to give a fluid, high-performance user experience. Visualizations are defined via a declarative specification.

A soda visualization for Dfam.

A soda visualization for RepeatMasker Transposable Element annotations.

A library for visualizing biological annotation.

An elegant CLI wizard enhancing biotech research efficiency, with adaptable features for other domains, albeit with minor constraints.

CGView: Circular Genome Viewer

Load a chihaya-formatted delayed matrix into a Javascript session

Angular 17+ components for cytoscape charting.

Backend for kana's single-cell analyses. This supports single or multiple samples, execution in Node.js or the browser, in-memory caching of results for iterative analyses, and serialization to/from file for redistribution.

Fetch remote single-cell RNA-seq datasets for input into the bakana analysis pipeline.

Extensions to the bakana single-cell analysis pipeline to accept takane-formatted datasets and results. This facilitates interoperability with the rest of the ArtifactDB ecosystem.

Bioconductor classes, generics and methods, implemented in Javascript.