Bioinformatics Packages

UMMS Genome Browser

A simple module that simulates the life cycle of an amoeba at the molecular level by using a (semi) TRNG.

Javascript APIs for disease cell atlas approximation

Visualisation of multiple sequence alignments and phylogenetic trees

A React component library designed for data visualisation and analysis of single-cell and spatial multi-omics data.

TMalign structure aligner port to WASM

Validate the output files produced by the bakana single-cell analysis pipelines.

This package retrieves gene information from the HGNC database using its REST service.

Molstar as a react component

Experiment. Performs global and local pairwise sequence alignment through WebAssembly.

Single cell RNA-seq analysis in Javascript

Web plugin for multiple RNA secondary structure visualization in radial layout

Faceted experiments list for Single Cell Expression Atlas gene search results

Typescript implementation of Regular Architectures

A package to generate SVG images of protein annotation.

bioinformatics package for node-red (genomic analysis)

bioinformatics package for node-red (sequence management)

bioinformatics package for node-red (input / output)

convert newick string to phyloxml

This is set of public packages from Miyagi-Do lab, related to mathematical modeling applied to life sciences.