Bioinformatics Packages

Embeddable genomic visualization component based on the Integrative Genomics Viewer

Javascript library to draw haplotype network.

This is a set of packages/methods built to be used on the context of applied statistics

UMMS Genome Browser

A simple module that simulates the life cycle of an amoeba at the molecular level by using a (semi) TRNG.

Javascript APIs for disease cell atlas approximation

Visualisation of multiple sequence alignments and phylogenetic trees

CGView: Circular Genome Viewer

Load a chihaya-formatted delayed matrix into a Javascript session

Angular 17+ components for cytoscape charting.

Backend for kana's single-cell analyses. This supports single or multiple samples, execution in Node.js or the browser, in-memory caching of results for iterative analyses, and serialization to/from file for redistribution.

Fetch remote single-cell RNA-seq datasets for input into the bakana analysis pipeline.

Extensions to the bakana single-cell analysis pipeline to accept takane-formatted datasets and results. This facilitates interoperability with the rest of the ArtifactDB ecosystem.

Bioconductor classes, generics and methods, implemented in Javascript.

Streamable FASTQ parser

This package provides misc functions for bioinformatics which i collected during my studies.

Simple, lightweight, and fast Node.js module for enabling DNA sequences.

DSSP port to WASM

The `epiviz.gl` project is meant to visualize genomic data using webgl and webworkers, in an effort to give a fluid, high-performance user experience. Visualizations are defined via a declarative specification.

read feature and sequence data and produce highlighted fasta