Genomics Packages

Read htsjdk Tribble indexes using pure JavaScript

Node implementation of interval-tree based cache data structures: base class

Draws a Needle-Plot for mutation data (stacked).

Chromosome visualization with D3.js

Provides SVG View for Genome Features rendered with the Apollo Track Web Service via JBrowse

A module for querying the Cancer Genomics Data Server (CGDS).

Generate bio data from sunlight and alphabets

Google Summer of Code Open Health GDC exploration (NCI's Genomic Data Commons)

A VCF parser, for the browser & node.

from NCBI gi to taxonomy id

An extensible, embeddable karyogram for the browser.

Genome Dashboard is the logic behind a web-based prototype of a genomics dashboard, specifically designed to integrate informatics and 4D material studies of chromatin. Genome Dashboard unites our Interactive Chromatin Modeling (ICM) tools with the Biodal

An implementation of the GA4GH interface in node.js

Query local or remote Tabix-indexed VCFs by genomic position

convert phred quality scores to and from other numerical representations

Genome homology API client

HiGlass Hi-C / genomic / large data viewer / based on original higlass package by Peter Kerpedjiev

A fully-featured app for viewing, exploring, and annotating 1D and 2D genomic data

A general purpose module for parsing FASTA files

HiGlass Hi-C / genomic / large data viewer / based on original higlass package by Peter Kerpedjiev