Genomics Packages

Chromosome visualization with D3.js

Provides SVG View for Genome Features rendered with the Apollo Track Web Service via JBrowse

Read htsjdk Tribble indexes using pure JavaScript

Draws a Needle-Plot for mutation data (stacked).

Node implementation of interval-tree based cache data structures: base class

Google Summer of Code Open Health GDC exploration (NCI's Genomic Data Commons)

A module for querying the Cancer Genomics Data Server (CGDS).

Generate bio data from sunlight and alphabets

An extensible, embeddable karyogram for the browser.

Genome Dashboard is the logic behind a web-based prototype of a genomics dashboard, specifically designed to integrate informatics and 4D material studies of chromatin. Genome Dashboard unites our Interactive Chromatin Modeling (ICM) tools with the Biodal

An implementation of the GA4GH interface in node.js

A VCF parser, for the browser & node.

from NCBI gi to taxonomy id

Genome homology API client

HiGlass Hi-C / genomic / large data viewer / based on original higlass package by Peter Kerpedjiev

A fully-featured app for viewing, exploring, and annotating 1D and 2D genomic data

A general purpose module for parsing FASTA files

Query local or remote Tabix-indexed VCFs by genomic position

convert phred quality scores to and from other numerical representations

HiGlass Hi-C / genomic / large data viewer / based on original higlass package by Peter Kerpedjiev